SELECTpro

effective protein model selection using a structure-based energy function resistant to blunders


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SELECTpro Overview

SELECTpro takes the amino acid sequence of a protein and the backbone coordinates of a corresponding model as input and calculates a total pseudo-energy. This value is normalized to the 0.0 to 1.0 confidence scale. Higher scores indicate higher relative model confidence.

Individual Energy Terms

The SELECTpro energy function is a linear combination of independently calculated energy terms. The abbreviations for the energy terms used here are also used in the results email.

Reduced Representation Energy Terms
The following terms are calculated from the backbone plus centroid representation of the protein structure. All-Heavy Atom Representation Energy Terms
The following terms are calculated from the all-heavy atom model respresentation.

Contact SELECTpro Administrator:cmagnan@ics.uci.edu

Institute for Genomics and Bioinformatics
School of Information & Computer Science
University of California Irvine